STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VMA21Vacuolar ATPase assembly factor VMA21. (85 aa)    
Predicted Functional Partners:
ATP6V0C
ATPase H+ transporting V0 subunit c.
    
 
 0.956
ATP6V0D1
ATPase H+ transporting V0 subunit d1.
   
 
 0.915
ENSCAPP00000010489
annotation not available
   
 
 0.915
ATP5MC2
ATP synthase membrane subunit c locus 2.
    
 
 0.818
ATP5MC1
ATP synthase membrane subunit c locus 1.
    
 
 0.818
ENSCAPP00000003996
annotation not available
   
 
 0.799
TCIRG1
T cell immune regulator 1, ATPase H+ transporting V0 subunit a3.
    
 
 0.789
ATP6V0A4
ATPase H+ transporting V0 subunit a4.
    
 
 0.789
ATP6V0A1
ATPase H+ transporting V0 subunit a1.
    
 
 0.789
ATP6V0A2
ATPase H+ transporting V0 subunit a2.
    
 
 0.789
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.