Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VMA21Vacuolar ATPase assembly factor VMA21. (85 aa)    
Predicted Functional Partners:
ATP6V0C
ATPase H+ transporting V0 subunit c.
   
 
 0.970
KIAA2013
KIAA2013.
   
   0.937
ENSCAPP00000003996
annotation not available
   
 
 0.912
ATP6V0E1
ATPase H+ transporting V0 subunit e1.
    
 
 0.897
ENSCAPP00000016686
annotation not available
    
 
 0.897
ATP6V0D1
ATPase H+ transporting V0 subunit d1.
   
 
 0.885
ENSCAPP00000010489
annotation not available
   
 
 0.885
ATP6V0A2
ATPase H+ transporting V0 subunit a2.
    
 
 0.884
ENSCAPP00000009216
annotation not available
    
   0.824
SCAF4
SR-related CTD associated factor 4.
    
   0.820
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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