Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000005553annotation not available (117 aa)    
Predicted Functional Partners:
ENSCAPP00000014093
annotation not available
   
   0.995
KHDRBS1
KH RNA binding domain containing, signal transduction associated 1.
   
   0.960
ENSCAPP00000003691
annotation not available
   
 
 0.924
ENSCAPP00000014392
annotation not available
   
 
 0.924
PTBP2
Polypyrimidine tract binding protein 2.
   
 
 0.909
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
   
 
 0.901
SIAH1
Siah E3 ubiquitin protein ligase 1.
    
 
 0.873
ENSCAPP00000003525
annotation not available
   
 
 0.843
RBM3
RNA binding motif protein 3.
   
 
 0.824
U2AF2
U2 small nuclear RNA auxiliary factor 2.
   
 
 0.820
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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