Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SH3TC2SH3 domain and tetratricopeptide repeats 2. (1097 aa)    
Predicted Functional Partners:
ENSCAPP00000008469
annotation not available
      
 0.949
LITAF
Lipopolysaccharide induced TNF factor.
      
 0.937
MTMR2
Myotubularin related protein 2.
      
 0.923
GDAP1
Ganglioside induced differentiation associated protein 1.
      
 0.905
FGD4
FYVE, RhoGEF and PH domain containing 4.
      
 0.885
MPZ
Myelin protein zero.
      
 0.756
AP5S1
Adaptor related protein complex 5 subunit sigma 1.
      
 0.743
SH3TC1
SH3 domain and tetratricopeptide repeats 1.
      
 0.684
ENSCAPP00000009498
annotation not available
      
 0.660
SBF1
SET binding factor 1.
      
 0.660
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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