CTSO protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

CTSO

Cathepsin O. (252 aa)

Predicted Functional Partners:

BCL2L1

0.912

XIAP

0.911

ENSCAPP00000013632

0.911

ENSCAPP00000009702

0.903

CTSZ

0.896

CTSB

0.895

CTSH

0.885

ENSCAPP00000015540

0.883

CTSA

0.876

CTSE

0.870

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCL2L1	CTSB	ENSCAPP00000011244	ENSCAPP00000001034	BCL2 like 1.	Cathepsin B.	0.917
BCL2L1	CTSE	ENSCAPP00000011244	ENSCAPP00000007326	BCL2 like 1.	Cathepsin E.	0.675
BCL2L1	CTSH	ENSCAPP00000011244	ENSCAPP00000008163	BCL2 like 1.	Cathepsin H.	0.911
BCL2L1	CTSO	ENSCAPP00000011244	ENSCAPP00000005566	BCL2 like 1.	Cathepsin O.	0.912
BCL2L1	CTSZ	ENSCAPP00000011244	ENSCAPP00000004745	BCL2 like 1.	Cathepsin Z.	0.930
BCL2L1	ENSCAPP00000009702	ENSCAPP00000011244	ENSCAPP00000009702	BCL2 like 1.	annotation not available	0.911
BCL2L1	ENSCAPP00000013632	ENSCAPP00000011244	ENSCAPP00000013632	BCL2 like 1.	annotation not available	0.997
BCL2L1	ENSCAPP00000015540	ENSCAPP00000011244	ENSCAPP00000015540	BCL2 like 1.	annotation not available	0.917
BCL2L1	XIAP	ENSCAPP00000011244	ENSCAPP00000004877	BCL2 like 1.	X-linked inhibitor of apoptosis.	0.697
CTSA	CTSB	ENSCAPP00000008367	ENSCAPP00000001034	Cathepsin A.	Cathepsin B.	0.965
CTSA	CTSE	ENSCAPP00000008367	ENSCAPP00000007326	Cathepsin A.	Cathepsin E.	0.892
CTSA	CTSH	ENSCAPP00000008367	ENSCAPP00000008163	Cathepsin A.	Cathepsin H.	0.914
CTSA	CTSO	ENSCAPP00000008367	ENSCAPP00000005566	Cathepsin A.	Cathepsin O.	0.876
CTSA	CTSZ	ENSCAPP00000008367	ENSCAPP00000004745	Cathepsin A.	Cathepsin Z.	0.935
CTSA	ENSCAPP00000009702	ENSCAPP00000008367	ENSCAPP00000009702	Cathepsin A.	annotation not available	0.932
CTSA	ENSCAPP00000015540	ENSCAPP00000008367	ENSCAPP00000015540	Cathepsin A.	annotation not available	0.896
CTSB	BCL2L1	ENSCAPP00000001034	ENSCAPP00000011244	Cathepsin B.	BCL2 like 1.	0.917
CTSB	CTSA	ENSCAPP00000001034	ENSCAPP00000008367	Cathepsin B.	Cathepsin A.	0.965
CTSB	CTSE	ENSCAPP00000001034	ENSCAPP00000007326	Cathepsin B.	Cathepsin E.	0.886
CTSB	CTSH	ENSCAPP00000001034	ENSCAPP00000008163	Cathepsin B.	Cathepsin H.	0.946