ENSCAPP00000005589 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSCAPP00000005589

annotation not available (92 aa)

Predicted Functional Partners:

ENSCAPP00000001161

0.989

SNRPF

0.989

SNRPD1

0.989

LSM3

0.979

SNRPB

0.974

LSM2

0.968

LSM5

0.964

SNRPC

0.959

ENSCAPP00000003884

0.956

ENSCAPP00000010418

0.956

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001161	ENSCAPP00000003884	ENSCAPP00000001161	ENSCAPP00000003884	annotation not available	annotation not available	0.999
ENSCAPP00000001161	ENSCAPP00000005589	ENSCAPP00000001161	ENSCAPP00000005589	annotation not available	annotation not available	0.989
ENSCAPP00000001161	ENSCAPP00000010418	ENSCAPP00000001161	ENSCAPP00000010418	annotation not available	annotation not available	0.999
ENSCAPP00000001161	LSM2	ENSCAPP00000001161	ENSCAPP00000008228	annotation not available	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.996
ENSCAPP00000001161	LSM3	ENSCAPP00000001161	ENSCAPP00000015678	annotation not available	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSCAPP00000001161	LSM5	ENSCAPP00000001161	ENSCAPP00000004435	annotation not available	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.997
ENSCAPP00000001161	SNRPB	ENSCAPP00000001161	ENSCAPP00000011646	annotation not available	Small nuclear ribonucleoprotein polypeptides B and B1.	0.999
ENSCAPP00000001161	SNRPC	ENSCAPP00000001161	ENSCAPP00000002309	annotation not available	Small nuclear ribonucleoprotein polypeptide C.	0.999
ENSCAPP00000001161	SNRPD1	ENSCAPP00000001161	ENSCAPP00000005878	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.999
ENSCAPP00000001161	SNRPF	ENSCAPP00000001161	ENSCAPP00000004768	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSCAPP00000003884	ENSCAPP00000001161	ENSCAPP00000003884	ENSCAPP00000001161	annotation not available	annotation not available	0.999
ENSCAPP00000003884	ENSCAPP00000005589	ENSCAPP00000003884	ENSCAPP00000005589	annotation not available	annotation not available	0.956
ENSCAPP00000003884	LSM2	ENSCAPP00000003884	ENSCAPP00000008228	annotation not available	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.998
ENSCAPP00000003884	LSM3	ENSCAPP00000003884	ENSCAPP00000015678	annotation not available	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.983
ENSCAPP00000003884	LSM5	ENSCAPP00000003884	ENSCAPP00000004435	annotation not available	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.994
ENSCAPP00000003884	SNRPB	ENSCAPP00000003884	ENSCAPP00000011646	annotation not available	Small nuclear ribonucleoprotein polypeptides B and B1.	0.998
ENSCAPP00000003884	SNRPC	ENSCAPP00000003884	ENSCAPP00000002309	annotation not available	Small nuclear ribonucleoprotein polypeptide C.	0.994
ENSCAPP00000003884	SNRPD1	ENSCAPP00000003884	ENSCAPP00000005878	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.999
ENSCAPP00000003884	SNRPF	ENSCAPP00000003884	ENSCAPP00000004768	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSCAPP00000005589	ENSCAPP00000001161	ENSCAPP00000005589	ENSCAPP00000001161	annotation not available	annotation not available	0.989