RUFY1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RUFY1

RUN and FYVE domain containing 1. (643 aa)

Predicted Functional Partners:

RUFY2

0.988

ENSCAPP00000016336

0.988

RAB4A

0.987

ENSCAPP00000000047

0.975

ENSCAPP00000016074

0.961

ENSCAPP00000010407

0.943

ENSCAPP00000003241

0.938

RAB14

0.891

UTP25

0.876

RUBCNL

0.811

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000047	ENSCAPP00000010407	ENSCAPP00000000047	ENSCAPP00000010407	annotation not available	annotation not available	0.714
ENSCAPP00000000047	ENSCAPP00000016336	ENSCAPP00000000047	ENSCAPP00000016336	annotation not available	annotation not available	0.987
ENSCAPP00000000047	RAB4A	ENSCAPP00000000047	ENSCAPP00000017249	annotation not available	RAB4A, member RAS oncogene family.	0.714
ENSCAPP00000000047	RUFY1	ENSCAPP00000000047	ENSCAPP00000005592	annotation not available	RUN and FYVE domain containing 1.	0.975
ENSCAPP00000000047	RUFY2	ENSCAPP00000000047	ENSCAPP00000015591	annotation not available	RUN and FYVE domain containing 2.	0.881
ENSCAPP00000003241	RUFY1	ENSCAPP00000003241	ENSCAPP00000005592	annotation not available	RUN and FYVE domain containing 1.	0.938
ENSCAPP00000010407	ENSCAPP00000000047	ENSCAPP00000010407	ENSCAPP00000000047	annotation not available	annotation not available	0.714
ENSCAPP00000010407	ENSCAPP00000016336	ENSCAPP00000010407	ENSCAPP00000016336	annotation not available	annotation not available	0.827
ENSCAPP00000010407	RAB14	ENSCAPP00000010407	ENSCAPP00000017647	annotation not available	RAB14, member RAS oncogene family.	0.611
ENSCAPP00000010407	RAB4A	ENSCAPP00000010407	ENSCAPP00000017249	annotation not available	RAB4A, member RAS oncogene family.	0.979
ENSCAPP00000010407	RUFY1	ENSCAPP00000010407	ENSCAPP00000005592	annotation not available	RUN and FYVE domain containing 1.	0.943
ENSCAPP00000010407	RUFY2	ENSCAPP00000010407	ENSCAPP00000015591	annotation not available	RUN and FYVE domain containing 2.	0.827
ENSCAPP00000016074	RUFY1	ENSCAPP00000016074	ENSCAPP00000005592	annotation not available	RUN and FYVE domain containing 1.	0.961
ENSCAPP00000016336	ENSCAPP00000000047	ENSCAPP00000016336	ENSCAPP00000000047	annotation not available	annotation not available	0.987
ENSCAPP00000016336	ENSCAPP00000010407	ENSCAPP00000016336	ENSCAPP00000010407	annotation not available	annotation not available	0.827
ENSCAPP00000016336	RAB4A	ENSCAPP00000016336	ENSCAPP00000017249	annotation not available	RAB4A, member RAS oncogene family.	0.870
ENSCAPP00000016336	RUFY1	ENSCAPP00000016336	ENSCAPP00000005592	annotation not available	RUN and FYVE domain containing 1.	0.988
ENSCAPP00000016336	RUFY2	ENSCAPP00000016336	ENSCAPP00000015591	annotation not available	RUN and FYVE domain containing 2.	0.899
RAB14	ENSCAPP00000010407	ENSCAPP00000017647	ENSCAPP00000010407	RAB14, member RAS oncogene family.	annotation not available	0.611
RAB14	RAB4A	ENSCAPP00000017647	ENSCAPP00000017249	RAB14, member RAS oncogene family.	RAB4A, member RAS oncogene family.	0.738