ENSCAPP00000005601 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000005601

annotation not available (153 aa)

Predicted Functional Partners:

APOB

0.936

ARHGEF1

0.911

ENSCAPP00000012887

0.878

ROCK1

0.864

ARHGEF12

0.831

ARHGEF11

0.831

CP

0.725

CD36

0.705

TNC

0.692

TNR

0.692

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOB	CD36	ENSCAPP00000013823	ENSCAPP00000005556	Apolipoprotein B.	CD36 molecule.	0.964
APOB	ENSCAPP00000005601	ENSCAPP00000013823	ENSCAPP00000005601	Apolipoprotein B.	annotation not available	0.936
ARHGEF1	ARHGEF11	ENSCAPP00000005918	ENSCAPP00000018130	Rho guanine nucleotide exchange factor 1.	Rho guanine nucleotide exchange factor 11.	0.927
ARHGEF1	ARHGEF12	ENSCAPP00000005918	ENSCAPP00000002577	Rho guanine nucleotide exchange factor 1.	Rho guanine nucleotide exchange factor 12.	0.911
ARHGEF1	ENSCAPP00000005601	ENSCAPP00000005918	ENSCAPP00000005601	Rho guanine nucleotide exchange factor 1.	annotation not available	0.911
ARHGEF1	ENSCAPP00000012887	ENSCAPP00000005918	ENSCAPP00000012887	Rho guanine nucleotide exchange factor 1.	annotation not available	0.570
ARHGEF1	ROCK1	ENSCAPP00000005918	ENSCAPP00000015212	Rho guanine nucleotide exchange factor 1.	Rho associated coiled-coil containing protein kinase 1.	0.630
ARHGEF11	ARHGEF1	ENSCAPP00000018130	ENSCAPP00000005918	Rho guanine nucleotide exchange factor 11.	Rho guanine nucleotide exchange factor 1.	0.927
ARHGEF11	ARHGEF12	ENSCAPP00000018130	ENSCAPP00000002577	Rho guanine nucleotide exchange factor 11.	Rho guanine nucleotide exchange factor 12.	0.926
ARHGEF11	ENSCAPP00000005601	ENSCAPP00000018130	ENSCAPP00000005601	Rho guanine nucleotide exchange factor 11.	annotation not available	0.831
ARHGEF11	ENSCAPP00000012887	ENSCAPP00000018130	ENSCAPP00000012887	Rho guanine nucleotide exchange factor 11.	annotation not available	0.570
ARHGEF11	ROCK1	ENSCAPP00000018130	ENSCAPP00000015212	Rho guanine nucleotide exchange factor 11.	Rho associated coiled-coil containing protein kinase 1.	0.550
ARHGEF12	ARHGEF1	ENSCAPP00000002577	ENSCAPP00000005918	Rho guanine nucleotide exchange factor 12.	Rho guanine nucleotide exchange factor 1.	0.911
ARHGEF12	ARHGEF11	ENSCAPP00000002577	ENSCAPP00000018130	Rho guanine nucleotide exchange factor 12.	Rho guanine nucleotide exchange factor 11.	0.926
ARHGEF12	ENSCAPP00000005601	ENSCAPP00000002577	ENSCAPP00000005601	Rho guanine nucleotide exchange factor 12.	annotation not available	0.831
ARHGEF12	ENSCAPP00000012887	ENSCAPP00000002577	ENSCAPP00000012887	Rho guanine nucleotide exchange factor 12.	annotation not available	0.570
ARHGEF12	ROCK1	ENSCAPP00000002577	ENSCAPP00000015212	Rho guanine nucleotide exchange factor 12.	Rho associated coiled-coil containing protein kinase 1.	0.626
CD36	APOB	ENSCAPP00000005556	ENSCAPP00000013823	CD36 molecule.	Apolipoprotein B.	0.964
CD36	ENSCAPP00000005601	ENSCAPP00000005556	ENSCAPP00000005601	CD36 molecule.	annotation not available	0.705
CP	ENSCAPP00000005601	ENSCAPP00000008235	ENSCAPP00000005601	Ceruloplasmin.	annotation not available	0.725