Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS41VPS41 subunit of HOPS complex. (838 aa)    
Predicted Functional Partners:
VPS11
VPS11 core subunit of CORVET and HOPS complexes.
   
 0.999
VPS16
VPS16 core subunit of CORVET and HOPS complexes.
   
 0.999
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.999
ENSCAPP00000000647
annotation not available
   
 0.998
VPS39
VPS39 subunit of HOPS complex.
   
 0.998
STX17
Syntaxin 17.
    
 0.998
VPS8
VPS8 subunit of CORVET complex.
   
 0.997
AP3D1
Adaptor related protein complex 3 subunit delta 1.
   
 0.995
ENSCAPP00000009997
annotation not available
   
 0.993
ENSCAPP00000018279
annotation not available
   
 0.993
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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