Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000005654annotation not available (54 aa)    
Predicted Functional Partners:
RPRD1A
Regulation of nuclear pre-mRNA domain containing 1A.
   
 0.998
GPN3
GPN-loop GTPase 3.
    
 
 0.995
POLR2E
RNA polymerase II subunit E.
    
 0.991
GPN1
GPN-loop GTPase 1.
    
 
 0.991
ENSCAPP00000001157
annotation not available
    
 0.990
POLR2F
RNA polymerase II subunit F.
    
 0.990
ENSCAPP00000011458
annotation not available
    
 0.989
ENSCAPP00000005711
annotation not available
    
  0.988
POLR2G
RNA polymerase II subunit G.
    
 0.988
RPRD2
Regulation of nuclear pre-mRNA domain containing 2.
   
 0.985
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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