Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTPRJProtein tyrosine phosphatase receptor type J. (1261 aa)    
Predicted Functional Partners:
CTNND1
Catenin delta 1.
    
 0.982
APMAP
Adipocyte plasma membrane associated protein.
      
 0.949
PAPPA
Pappalysin 1.
    
 0.946
ENSCAPP00000005732
annotation not available
     
 0.927
ARVCF
ARVCF delta catenin family member.
    
 0.927
ENSCAPP00000013002
annotation not available
    
  0.921
PTPN11
Protein tyrosine phosphatase non-receptor type 11.
     
  0.911
SRC
SRC proto-oncogene, non-receptor tyrosine kinase.
    
 0.903
ENSCAPP00000013530
annotation not available
    
 0.903
CTNNB1
Catenin beta 1.
    
 0.873
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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