Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPH3ALRabphilin 3A like (without C2 domains). (311 aa)    
Predicted Functional Partners:
RAB3A
RAB3A, member RAS oncogene family.
   
 
 0.921
DOC2B
Double C2 domain beta.
 
    
 0.917
RAB3B
RAB3B, member RAS oncogene family.
   
 
 0.834
RAB3C
RAB3C, member RAS oncogene family.
   
 
 0.834
ENSCAPP00000002771
annotation not available
   
 
 0.819
SYT10
Synaptotagmin 10.
 
  
 
 0.743
SNAP25
Synaptosome associated protein 25.
   
 0.733
RAB27A
RAB27A, member RAS oncogene family.
    
 
 0.721
VPS53
VPS53 subunit of GARP complex.
      
 0.721
AFAP1L1
Actin filament associated protein 1 like 1.
      
 0.702
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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