Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF19BRing finger protein 19B. (463 aa)    
Predicted Functional Partners:
ENSCAPP00000011225
annotation not available
    
 0.859
ENSCAPP00000010783
annotation not available
    
 
 0.852
ENSCAPP00000013526
annotation not available
    
 
 0.852
UBE2L6
Ubiquitin conjugating enzyme E2 L6.
    
 0.833
DIRAS2
DIRAS family GTPase 2.
    
   0.833
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.696
ENSCAPP00000010366
annotation not available
    
  0.696
CGRRF1
Cell growth regulator with ring finger domain 1.
    
 0.669
SOD1
Superoxide dismutase 1.
    
 
 0.629
ENSCAPP00000005342
annotation not available
    
 0.623
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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