SYT7 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SYT7

Synaptotagmin 7. (539 aa)

Predicted Functional Partners:

SNAP25

0.725

ENSCAPP00000005959

0.666

SNAP23

0.657

RAB3B

0.618

RAB3A

0.618

RAB3C

0.618

STON2

0.612

STX1A

0.605

ZDHHC13

0.586

ENSCAPP00000002771

0.585

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002771	ENSCAPP00000005959	ENSCAPP00000002771	ENSCAPP00000005959	annotation not available	annotation not available	0.589
ENSCAPP00000002771	RAB3A	ENSCAPP00000002771	ENSCAPP00000008550	annotation not available	RAB3A, member RAS oncogene family.	0.605
ENSCAPP00000002771	RAB3B	ENSCAPP00000002771	ENSCAPP00000001099	annotation not available	RAB3B, member RAS oncogene family.	0.766
ENSCAPP00000002771	RAB3C	ENSCAPP00000002771	ENSCAPP00000014345	annotation not available	RAB3C, member RAS oncogene family.	0.527
ENSCAPP00000002771	SNAP23	ENSCAPP00000002771	ENSCAPP00000014014	annotation not available	Synaptosome associated protein 23.	0.555
ENSCAPP00000002771	SNAP25	ENSCAPP00000002771	ENSCAPP00000001511	annotation not available	Synaptosome associated protein 25.	0.685
ENSCAPP00000002771	STX1A	ENSCAPP00000002771	ENSCAPP00000000343	annotation not available	Syntaxin 1A.	0.523
ENSCAPP00000002771	SYT7	ENSCAPP00000002771	ENSCAPP00000005679	annotation not available	Synaptotagmin 7.	0.585
ENSCAPP00000005959	ENSCAPP00000002771	ENSCAPP00000005959	ENSCAPP00000002771	annotation not available	annotation not available	0.589
ENSCAPP00000005959	RAB3A	ENSCAPP00000005959	ENSCAPP00000008550	annotation not available	RAB3A, member RAS oncogene family.	0.859
ENSCAPP00000005959	RAB3B	ENSCAPP00000005959	ENSCAPP00000001099	annotation not available	RAB3B, member RAS oncogene family.	0.792
ENSCAPP00000005959	RAB3C	ENSCAPP00000005959	ENSCAPP00000014345	annotation not available	RAB3C, member RAS oncogene family.	0.792
ENSCAPP00000005959	SNAP23	ENSCAPP00000005959	ENSCAPP00000014014	annotation not available	Synaptosome associated protein 23.	0.998
ENSCAPP00000005959	SNAP25	ENSCAPP00000005959	ENSCAPP00000001511	annotation not available	Synaptosome associated protein 25.	0.999
ENSCAPP00000005959	STON2	ENSCAPP00000005959	ENSCAPP00000014453	annotation not available	Stonin 2.	0.690
ENSCAPP00000005959	STX1A	ENSCAPP00000005959	ENSCAPP00000000343	annotation not available	Syntaxin 1A.	0.999
ENSCAPP00000005959	SYT7	ENSCAPP00000005959	ENSCAPP00000005679	annotation not available	Synaptotagmin 7.	0.666
RAB3A	ENSCAPP00000002771	ENSCAPP00000008550	ENSCAPP00000002771	RAB3A, member RAS oncogene family.	annotation not available	0.605
RAB3A	ENSCAPP00000005959	ENSCAPP00000008550	ENSCAPP00000005959	RAB3A, member RAS oncogene family.	annotation not available	0.859
RAB3A	RAB3B	ENSCAPP00000008550	ENSCAPP00000001099	RAB3A, member RAS oncogene family.	RAB3B, member RAS oncogene family.	0.975