STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HPCAHippocalcin. (148 aa)    
Predicted Functional Partners:
PI4KB
Phosphatidylinositol 4-kinase beta.
    
 
 0.802
DLG4
Discs large MAGUK scaffold protein 4.
   
 0.716
ENSCAPP00000001202
annotation not available
   
 0.711
KCND2
Potassium voltage-gated channel subfamily D member 2.
   
 0.711
KCND1
Potassium voltage-gated channel subfamily D member 1.
    
 0.699
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.694
ENSCAPP00000008321
annotation not available
    
 0.693
MYO3B
Myosin IIIB.
    
 0.686
ENSCAPP00000003807
annotation not available
    
 0.686
ENSCAPP00000015484
annotation not available
    
 0.686
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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