Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000005686annotation not available (139 aa)    
Predicted Functional Partners:
UBQLN4
Ubiquilin 4.
    
  0.918
ZMYM3
Zinc finger MYM-type containing 3.
   
 0.916
CBX1
Chromobox 1.
    
  0.901
ZMYM2
Zinc finger MYM-type containing 2.
   
 0.883
ZMYM4
Zinc finger MYM-type containing 4.
   
 0.877
ENSCAPP00000002246
annotation not available
    
  0.849
WDR70
WD repeat domain 70.
      
 0.797
MMACHC
Metabolism of cobalamin associated C.
   
   0.677
EIF4E3
Eukaryotic translation initiation factor 4E family member 3.
    
 0.663
PHF20L1
PHD finger protein 20 like 1.
   
 0.654
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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