STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000005690annotation not available (210 aa)    
Predicted Functional Partners:
ENSCAPP00000001731
annotation not available
 
      0.814
POU1F1
POU class 1 homeobox 1.
 
 
  
 0.621
SNAPC1
Small nuclear RNA activating complex polypeptide 1.
    
  0.552
SNAPC4
Small nuclear RNA activating complex polypeptide 4.
    
  0.551
ENSCAPP00000004891
annotation not available
    
 
 0.538
POLR2F
RNA polymerase II subunit F.
     
 0.537
SOX10
SRY-box transcription factor 10.
    
 0.504
WT1
WT1 transcription factor.
    
 0.484
GTF2B
General transcription factor IIB.
    
 0.471
ZBTB44
Zinc finger and BTB domain containing 44.
    
 0.470
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.