Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RRP9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (435 aa)    
Predicted Functional Partners:
NOP58
NOP58 ribonucleoprotein.
   
 0.999
MPHOSPH10
M-phase phosphoprotein 10.
   
 0.998
SNU13
Small nuclear ribonucleoprotein 13.
   
 0.997
WDR46
WD repeat domain 46.
   
 0.997
ENSCAPP00000018577
annotation not available
   
 0.997
FBL
Fibrillarin.
   
 0.996
NOC4L
Nucleolar complex associated 4 homolog.
   
 0.996
UTP4
UTP4 small subunit processome component.
   
 0.996
WDR36
WD repeat domain 36.
   
 0.995
FBLL1
Fibrillarin like 1.
   
 0.995
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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