Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANKZF1Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1. (492 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
   
 0.980
NEMF
Nuclear export mediator factor.
   
 0.957
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 0.829
ENSCAPP00000016289
annotation not available
    
 0.829
LTN1
Listerin E3 ubiquitin protein ligase 1.
    
 0.826
ENSCAPP00000015470
annotation not available
   
 0.810
TOMM70
Translocase of outer mitochondrial membrane 70.
     
 0.743
ENSCAPP00000006861
annotation not available
    
 
 0.708
UBE4B
Ubiquitination factor E4B.
    
 
 0.708
ENSCAPP00000011409
annotation not available
     
  0.705
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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