KRT39 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

KRT39

Keratin 39. (482 aa)

Predicted Functional Partners:

PPL

0.844

ENSCAPP00000012310

0.677

EVPL

0.658

ENSCAPP00000009221

0.624

ENSCAPP00000012516

0.624

ENSCAPP00000018044

0.624

GAREM1

0.557

DCAF11

0.530

KRTAP11-1

0.530

ENSCAPP00000010775

0.523

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCAF11	KRT39	ENSCAPP00000008070	ENSCAPP00000005703	DDB1 and CUL4 associated factor 11.	Keratin 39.	0.530
ENSCAPP00000009221	KRT39	ENSCAPP00000009221	ENSCAPP00000005703	annotation not available	Keratin 39.	0.624
ENSCAPP00000010775	KRT39	ENSCAPP00000010775	ENSCAPP00000005703	annotation not available	Keratin 39.	0.523
ENSCAPP00000010775	KRTAP11-1	ENSCAPP00000010775	ENSCAPP00000012166	annotation not available	Keratin associated protein 11-1.	0.415
ENSCAPP00000012310	KRT39	ENSCAPP00000012310	ENSCAPP00000005703	annotation not available	Keratin 39.	0.677
ENSCAPP00000012516	KRT39	ENSCAPP00000012516	ENSCAPP00000005703	annotation not available	Keratin 39.	0.624
ENSCAPP00000018044	KRT39	ENSCAPP00000018044	ENSCAPP00000005703	annotation not available	Keratin 39.	0.624
EVPL	KRT39	ENSCAPP00000013004	ENSCAPP00000005703	Envoplakin.	Keratin 39.	0.658
EVPL	PPL	ENSCAPP00000013004	ENSCAPP00000014519	Envoplakin.	Periplakin.	0.999
GAREM1	KRT39	ENSCAPP00000016432	ENSCAPP00000005703	GRB2 associated regulator of MAPK1 subtype 1.	Keratin 39.	0.557
KRT39	DCAF11	ENSCAPP00000005703	ENSCAPP00000008070	Keratin 39.	DDB1 and CUL4 associated factor 11.	0.530
KRT39	ENSCAPP00000009221	ENSCAPP00000005703	ENSCAPP00000009221	Keratin 39.	annotation not available	0.624
KRT39	ENSCAPP00000010775	ENSCAPP00000005703	ENSCAPP00000010775	Keratin 39.	annotation not available	0.523
KRT39	ENSCAPP00000012310	ENSCAPP00000005703	ENSCAPP00000012310	Keratin 39.	annotation not available	0.677
KRT39	ENSCAPP00000012516	ENSCAPP00000005703	ENSCAPP00000012516	Keratin 39.	annotation not available	0.624
KRT39	ENSCAPP00000018044	ENSCAPP00000005703	ENSCAPP00000018044	Keratin 39.	annotation not available	0.624
KRT39	EVPL	ENSCAPP00000005703	ENSCAPP00000013004	Keratin 39.	Envoplakin.	0.658
KRT39	GAREM1	ENSCAPP00000005703	ENSCAPP00000016432	Keratin 39.	GRB2 associated regulator of MAPK1 subtype 1.	0.557
KRT39	KRTAP11-1	ENSCAPP00000005703	ENSCAPP00000012166	Keratin 39.	Keratin associated protein 11-1.	0.530
KRT39	PPL	ENSCAPP00000005703	ENSCAPP00000014519	Keratin 39.	Periplakin.	0.844