TMEM179 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TMEM179

Transmembrane protein 179. (131 aa)

Predicted Functional Partners:

TMEM145

0.447

ENSCAPP00000011099

0.444

CNTN2

0.436

FAM189A1

0.412

FAM81A

0.410

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN2	TMEM179	ENSCAPP00000005384	ENSCAPP00000005725	Contactin 2.	Transmembrane protein 179.	0.436
ENSCAPP00000011099	TMEM179	ENSCAPP00000011099	ENSCAPP00000005725	annotation not available	Transmembrane protein 179.	0.444
FAM189A1	TMEM179	ENSCAPP00000013007	ENSCAPP00000005725	Family with sequence similarity 189 member A1.	Transmembrane protein 179.	0.412
FAM81A	TMEM179	ENSCAPP00000014226	ENSCAPP00000005725	Family with sequence similarity 81 member A.	Transmembrane protein 179.	0.410
TMEM145	TMEM179	ENSCAPP00000010510	ENSCAPP00000005725	Transmembrane protein 145.	Transmembrane protein 179.	0.447
TMEM179	CNTN2	ENSCAPP00000005725	ENSCAPP00000005384	Transmembrane protein 179.	Contactin 2.	0.436
TMEM179	ENSCAPP00000011099	ENSCAPP00000005725	ENSCAPP00000011099	Transmembrane protein 179.	annotation not available	0.444
TMEM179	FAM189A1	ENSCAPP00000005725	ENSCAPP00000013007	Transmembrane protein 179.	Family with sequence similarity 189 member A1.	0.412
TMEM179	FAM81A	ENSCAPP00000005725	ENSCAPP00000014226	Transmembrane protein 179.	Family with sequence similarity 81 member A.	0.410
TMEM179	TMEM145	ENSCAPP00000005725	ENSCAPP00000010510	Transmembrane protein 179.	Transmembrane protein 145.	0.447