ENSCAPP00000005736 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

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Coexpression

Experiments

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[Homology]

Score

ENSCAPP00000005736

annotation not available (231 aa)

Predicted Functional Partners:

RGMA

0.997

UNC5A

0.994

NTN3

0.992

HJV

0.992

RGMB

0.983

UNC5C

0.982

UNC5B

0.977

ENSCAPP00000013002

0.975

UNC5D

0.960

CASP9

0.958

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP9	ENSCAPP00000005736	ENSCAPP00000000581	ENSCAPP00000005736	Caspase 9.	annotation not available	0.958
ENSCAPP00000005736	CASP9	ENSCAPP00000005736	ENSCAPP00000000581	annotation not available	Caspase 9.	0.958
ENSCAPP00000005736	ENSCAPP00000013002	ENSCAPP00000005736	ENSCAPP00000013002	annotation not available	annotation not available	0.975
ENSCAPP00000005736	HJV	ENSCAPP00000005736	ENSCAPP00000018521	annotation not available	Hemojuvelin BMP co-receptor.	0.992
ENSCAPP00000005736	NTN3	ENSCAPP00000005736	ENSCAPP00000011277	annotation not available	Netrin 3.	0.992
ENSCAPP00000005736	RGMA	ENSCAPP00000005736	ENSCAPP00000010625	annotation not available	Repulsive guidance molecule BMP co-receptor a.	0.997
ENSCAPP00000005736	RGMB	ENSCAPP00000005736	ENSCAPP00000000912	annotation not available	Repulsive guidance molecule BMP co-receptor b.	0.983
ENSCAPP00000005736	UNC5A	ENSCAPP00000005736	ENSCAPP00000016252	annotation not available	Unc-5 netrin receptor A.	0.994
ENSCAPP00000005736	UNC5B	ENSCAPP00000005736	ENSCAPP00000001263	annotation not available	Unc-5 netrin receptor B.	0.977
ENSCAPP00000005736	UNC5C	ENSCAPP00000005736	ENSCAPP00000016120	annotation not available	Unc-5 netrin receptor C.	0.982
ENSCAPP00000005736	UNC5D	ENSCAPP00000005736	ENSCAPP00000003688	annotation not available	Unc-5 netrin receptor D.	0.960
ENSCAPP00000013002	ENSCAPP00000005736	ENSCAPP00000013002	ENSCAPP00000005736	annotation not available	annotation not available	0.975
ENSCAPP00000013002	NTN3	ENSCAPP00000013002	ENSCAPP00000011277	annotation not available	Netrin 3.	0.558
ENSCAPP00000013002	UNC5A	ENSCAPP00000013002	ENSCAPP00000016252	annotation not available	Unc-5 netrin receptor A.	0.911
ENSCAPP00000013002	UNC5B	ENSCAPP00000013002	ENSCAPP00000001263	annotation not available	Unc-5 netrin receptor B.	0.927
ENSCAPP00000013002	UNC5C	ENSCAPP00000013002	ENSCAPP00000016120	annotation not available	Unc-5 netrin receptor C.	0.911
ENSCAPP00000013002	UNC5D	ENSCAPP00000013002	ENSCAPP00000003688	annotation not available	Unc-5 netrin receptor D.	0.911
HJV	ENSCAPP00000005736	ENSCAPP00000018521	ENSCAPP00000005736	Hemojuvelin BMP co-receptor.	annotation not available	0.992
NTN3	ENSCAPP00000005736	ENSCAPP00000011277	ENSCAPP00000005736	Netrin 3.	annotation not available	0.992
NTN3	ENSCAPP00000013002	ENSCAPP00000011277	ENSCAPP00000013002	Netrin 3.	annotation not available	0.558