STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD7Chromodomain helicase DNA binding protein 7. (2943 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.923
RUVBL2
RuvB like AAA ATPase 2.
    
 0.806
ENSCAPP00000017006
annotation not available
    
 0.791
SSRP1
Structure specific recognition protein 1.
    
 0.765
WDR5
WD repeat domain 5.
    
 0.762
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.755
ENSCAPP00000015921
annotation not available
    
 0.754
ENSCAPP00000001550
annotation not available
    
 0.749
POLR2C
RNA polymerase II subunit C.
   
 0.745
ENSCAPP00000013082
annotation not available
    
 0.735
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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