Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USP19Ubiquitin specific peptidase 19. (1248 aa)    
Predicted Functional Partners:
RNF123
Ring finger protein 123.
   
 0.960
SIAH1
Siah E3 ubiquitin protein ligase 1.
    
 
 0.958
USP7
Ubiquitin specific peptidase 7.
   
 0.912
ENSCAPP00000002506
annotation not available
    
 0.873
HSP90AA1
Heat shock protein 90 alpha family class A member 1.
    
 0.873
TP53
Tumor protein p53.
    
 0.873
SIAH2
Siah E3 ubiquitin protein ligase 2.
    
 
 0.834
ENSCAPP00000003228
annotation not available
    
 0.793
PAH
Phenylalanine hydroxylase.
    
   0.785
FKBP6
FKBP prolyl isomerase 6.
    
  0.773
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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