STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIFBPKinesin family binding protein. (495 aa)    
Predicted Functional Partners:
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.980
LSM1
LSM1 homolog, mRNA degradation associated.
    
 0.979
ENSCAPP00000000451
annotation not available
   
 0.979
DCP2
Decapping mRNA 2.
   
 0.979
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.974
DCP1B
Decapping mRNA 1B.
   
 0.972
LSM14B
LSM family member 14B.
   
 0.952
LSM14A
LSM14A mRNA processing body assembly factor.
   
 0.952
CNOT4
CCR4-NOT transcription complex subunit 4.
    
 0.939
ENSCAPP00000013546
annotation not available
    
 0.915
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.