STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIFBPKinesin family binding protein. (495 aa)    
Predicted Functional Partners:
DCP2
Decapping mRNA 2.
   
 0.956
ENSCAPP00000000451
annotation not available
   
 0.953
ENSCAPP00000009825
annotation not available
   
 0.953
DCP1B
Decapping mRNA 1B.
   
 0.953
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.951
LSM1
LSM1 homolog, mRNA degradation associated.
   
 0.948
ENSCAPP00000013546
annotation not available
    
 0.946
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.941
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.934
CNOT4
CCR4-NOT transcription complex subunit 4.
    
 0.918
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.