Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NUDT8Nudix hydrolase 8. (156 aa)    
Predicted Functional Partners:
PMPCA
Peptidase, mitochondrial processing alpha subunit.
   
   0.959
NUDT12
Nudix hydrolase 12.
   
 0.795
ENSCAPP00000007718
annotation not available
  
 
 0.712
ENSCAPP00000000451
annotation not available
  
 0.693
DCP1B
Decapping mRNA 1B.
    
 0.682
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.664
RRM1
Ribonucleotide reductase catalytic subunit M1.
    
 0.625
ENSCAPP00000009825
annotation not available
    
 0.624
GCH1
GTP cyclohydrolase 1.
    
 0.622
ENSCAPP00000002117
annotation not available
    
 0.622
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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