ENSCAPP00000005863 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000005863

annotation not available (135 aa)

Predicted Functional Partners:

PFDN1

0.996

ENSCAPP00000011285

0.995

PFDN2

0.993

PDRG1

0.992

CCT2

0.889

ENSCAPP00000003376

0.884

CCT4

0.883

TBCD

0.867

KATNB1

0.852

RC3H2

0.838

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCT2	CCT4	ENSCAPP00000012734	ENSCAPP00000016192	Chaperonin containing TCP1 subunit 2.	Chaperonin containing TCP1 subunit 4.	0.999
CCT2	ENSCAPP00000003376	ENSCAPP00000012734	ENSCAPP00000003376	Chaperonin containing TCP1 subunit 2.	annotation not available	0.999
CCT2	ENSCAPP00000005863	ENSCAPP00000012734	ENSCAPP00000005863	Chaperonin containing TCP1 subunit 2.	annotation not available	0.889
CCT2	ENSCAPP00000011285	ENSCAPP00000012734	ENSCAPP00000011285	Chaperonin containing TCP1 subunit 2.	annotation not available	0.954
CCT2	PDRG1	ENSCAPP00000012734	ENSCAPP00000012918	Chaperonin containing TCP1 subunit 2.	P53 and DNA damage regulated 1.	0.740
CCT2	PFDN1	ENSCAPP00000012734	ENSCAPP00000018190	Chaperonin containing TCP1 subunit 2.	Prefoldin subunit 1.	0.861
CCT2	PFDN2	ENSCAPP00000012734	ENSCAPP00000011094	Chaperonin containing TCP1 subunit 2.	Prefoldin subunit 2.	0.962
CCT2	RC3H2	ENSCAPP00000012734	ENSCAPP00000017425	Chaperonin containing TCP1 subunit 2.	Ring finger and CCCH-type domains 2.	0.800
CCT4	CCT2	ENSCAPP00000016192	ENSCAPP00000012734	Chaperonin containing TCP1 subunit 4.	Chaperonin containing TCP1 subunit 2.	0.999
CCT4	ENSCAPP00000003376	ENSCAPP00000016192	ENSCAPP00000003376	Chaperonin containing TCP1 subunit 4.	annotation not available	0.999
CCT4	ENSCAPP00000005863	ENSCAPP00000016192	ENSCAPP00000005863	Chaperonin containing TCP1 subunit 4.	annotation not available	0.883
CCT4	ENSCAPP00000011285	ENSCAPP00000016192	ENSCAPP00000011285	Chaperonin containing TCP1 subunit 4.	annotation not available	0.980
CCT4	PDRG1	ENSCAPP00000016192	ENSCAPP00000012918	Chaperonin containing TCP1 subunit 4.	P53 and DNA damage regulated 1.	0.740
CCT4	PFDN1	ENSCAPP00000016192	ENSCAPP00000018190	Chaperonin containing TCP1 subunit 4.	Prefoldin subunit 1.	0.869
CCT4	PFDN2	ENSCAPP00000016192	ENSCAPP00000011094	Chaperonin containing TCP1 subunit 4.	Prefoldin subunit 2.	0.978
ENSCAPP00000003376	CCT2	ENSCAPP00000003376	ENSCAPP00000012734	annotation not available	Chaperonin containing TCP1 subunit 2.	0.999
ENSCAPP00000003376	CCT4	ENSCAPP00000003376	ENSCAPP00000016192	annotation not available	Chaperonin containing TCP1 subunit 4.	0.999
ENSCAPP00000003376	ENSCAPP00000005863	ENSCAPP00000003376	ENSCAPP00000005863	annotation not available	annotation not available	0.884
ENSCAPP00000003376	ENSCAPP00000011285	ENSCAPP00000003376	ENSCAPP00000011285	annotation not available	annotation not available	0.951
ENSCAPP00000003376	PDRG1	ENSCAPP00000003376	ENSCAPP00000012918	annotation not available	P53 and DNA damage regulated 1.	0.740