Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYT1Synaptotagmin 1. (382 aa)    
Predicted Functional Partners:
SNAP25
Synaptosome associated protein 25.
   
 0.996
STX1A
Syntaxin 1A.
   
 0.993
SYT2
Synaptotagmin 2.
   
  0.992
STON2
Stonin 2.
   
 0.992
ENSCAPP00000005959
annotation not available
   
 0.989
SYT5
Synaptotagmin 5.
   
   0.988
STX1B
Syntaxin 1B.
   
 0.980
VAMP1
Vesicle associated membrane protein 1.
   
 0.964
VAMP3
Vesicle associated membrane protein 3.
    
 0.941
SYT4
Synaptotagmin 4.
   
 0.928
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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