ENSCAPP00000005873 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSCAPP00000005873

annotation not available (157 aa)

Predicted Functional Partners:

ENSCAPP00000001061

0.859

KSR1

0.851

PLK3

0.850

ARHGEF12

0.838

ENSCAPP00000012909

0.755

ENSCAPP00000006439

0.749

KSR2

0.723

TNC

0.692

TNR

0.692

TNN

0.692

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGEF12	ENSCAPP00000001061	ENSCAPP00000002577	ENSCAPP00000001061	Rho guanine nucleotide exchange factor 12.	annotation not available	0.911
ARHGEF12	ENSCAPP00000005873	ENSCAPP00000002577	ENSCAPP00000005873	Rho guanine nucleotide exchange factor 12.	annotation not available	0.838
ARHGEF12	ENSCAPP00000006439	ENSCAPP00000002577	ENSCAPP00000006439	Rho guanine nucleotide exchange factor 12.	annotation not available	0.985
ARHGEF12	ENSCAPP00000012909	ENSCAPP00000002577	ENSCAPP00000012909	Rho guanine nucleotide exchange factor 12.	annotation not available	0.986
ENSCAPP00000001061	ARHGEF12	ENSCAPP00000001061	ENSCAPP00000002577	annotation not available	Rho guanine nucleotide exchange factor 12.	0.911
ENSCAPP00000001061	ENSCAPP00000005873	ENSCAPP00000001061	ENSCAPP00000005873	annotation not available	annotation not available	0.859
ENSCAPP00000001061	KSR1	ENSCAPP00000001061	ENSCAPP00000000927	annotation not available	Kinase suppressor of ras 1.	0.957
ENSCAPP00000001061	KSR2	ENSCAPP00000001061	ENSCAPP00000000558	annotation not available	Kinase suppressor of ras 2.	0.922
ENSCAPP00000001061	PLK3	ENSCAPP00000001061	ENSCAPP00000000061	annotation not available	Polo like kinase 3.	0.913
ENSCAPP00000005873	ARHGEF12	ENSCAPP00000005873	ENSCAPP00000002577	annotation not available	Rho guanine nucleotide exchange factor 12.	0.838
ENSCAPP00000005873	ENSCAPP00000001061	ENSCAPP00000005873	ENSCAPP00000001061	annotation not available	annotation not available	0.859
ENSCAPP00000005873	ENSCAPP00000006439	ENSCAPP00000005873	ENSCAPP00000006439	annotation not available	annotation not available	0.749
ENSCAPP00000005873	ENSCAPP00000012909	ENSCAPP00000005873	ENSCAPP00000012909	annotation not available	annotation not available	0.755
ENSCAPP00000005873	KSR1	ENSCAPP00000005873	ENSCAPP00000000927	annotation not available	Kinase suppressor of ras 1.	0.851
ENSCAPP00000005873	KSR2	ENSCAPP00000005873	ENSCAPP00000000558	annotation not available	Kinase suppressor of ras 2.	0.723
ENSCAPP00000005873	PLK3	ENSCAPP00000005873	ENSCAPP00000000061	annotation not available	Polo like kinase 3.	0.850
ENSCAPP00000005873	TNC	ENSCAPP00000005873	ENSCAPP00000001029	annotation not available	Tenascin C.	0.692
ENSCAPP00000005873	TNN	ENSCAPP00000005873	ENSCAPP00000006034	annotation not available	Tenascin N.	0.692
ENSCAPP00000005873	TNR	ENSCAPP00000005873	ENSCAPP00000005820	annotation not available	Tenascin R.	0.692
ENSCAPP00000006439	ARHGEF12	ENSCAPP00000006439	ENSCAPP00000002577	annotation not available	Rho guanine nucleotide exchange factor 12.	0.985