LSM6 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

LSM6

LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)

Predicted Functional Partners:

LSM7

0.996

LSM8

0.995

LSM2

0.995

LSM3

0.994

ENSCAPP00000001161

0.993

LSM5

0.993

ENSCAPP00000013546

0.993

LSM1

0.990

SNRPF

0.987

SNRPD1

0.987

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001161	ENSCAPP00000013546	ENSCAPP00000001161	ENSCAPP00000013546	annotation not available	annotation not available	0.997
ENSCAPP00000001161	LSM1	ENSCAPP00000001161	ENSCAPP00000000258	annotation not available	LSM1 homolog, mRNA degradation associated.	0.677
ENSCAPP00000001161	LSM2	ENSCAPP00000001161	ENSCAPP00000008228	annotation not available	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.998
ENSCAPP00000001161	LSM3	ENSCAPP00000001161	ENSCAPP00000015678	annotation not available	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.998
ENSCAPP00000001161	LSM5	ENSCAPP00000001161	ENSCAPP00000004435	annotation not available	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSCAPP00000001161	LSM6	ENSCAPP00000001161	ENSCAPP00000005884	annotation not available	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.993
ENSCAPP00000001161	LSM7	ENSCAPP00000001161	ENSCAPP00000014057	annotation not available	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.998
ENSCAPP00000001161	LSM8	ENSCAPP00000001161	ENSCAPP00000006055	annotation not available	LSM8 homolog, U6 small nuclear RNA associated.	0.999
ENSCAPP00000001161	SNRPD1	ENSCAPP00000001161	ENSCAPP00000005878	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.999
ENSCAPP00000001161	SNRPF	ENSCAPP00000001161	ENSCAPP00000004768	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSCAPP00000013546	ENSCAPP00000001161	ENSCAPP00000013546	ENSCAPP00000001161	annotation not available	annotation not available	0.997
ENSCAPP00000013546	LSM1	ENSCAPP00000013546	ENSCAPP00000000258	annotation not available	LSM1 homolog, mRNA degradation associated.	0.999
ENSCAPP00000013546	LSM2	ENSCAPP00000013546	ENSCAPP00000008228	annotation not available	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSCAPP00000013546	LSM3	ENSCAPP00000013546	ENSCAPP00000015678	annotation not available	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.997
ENSCAPP00000013546	LSM5	ENSCAPP00000013546	ENSCAPP00000004435	annotation not available	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSCAPP00000013546	LSM6	ENSCAPP00000013546	ENSCAPP00000005884	annotation not available	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.993
ENSCAPP00000013546	LSM7	ENSCAPP00000013546	ENSCAPP00000014057	annotation not available	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSCAPP00000013546	LSM8	ENSCAPP00000013546	ENSCAPP00000006055	annotation not available	LSM8 homolog, U6 small nuclear RNA associated.	0.999
ENSCAPP00000013546	SNRPD1	ENSCAPP00000013546	ENSCAPP00000005878	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.997
ENSCAPP00000013546	SNRPF	ENSCAPP00000013546	ENSCAPP00000004768	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.998