STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZBED4Zinc finger BED-type containing 4. (1165 aa)    
Predicted Functional Partners:
RDH13
Retinol dehydrogenase 13.
    
 
 0.665
MLF2
Myeloid leukemia factor 2.
    
 
 0.496
ENSCAPP00000002180
annotation not available
    
 0.471
CHD5
Chromodomain helicase DNA binding protein 5.
    
 0.471
CHD3
Chromodomain helicase DNA binding protein 3.
    
 0.471
ENSCAPP00000015543
annotation not available
    
 0.471
ENSCAPP00000015653
annotation not available
    
 0.471
AMMECR1L
AMMECR1 like.
   
  
 0.459
SUMO1
Small ubiquitin like modifier 1.
    
  0.452
TBPL1
TATA-box binding protein like 1.
    
 
 0.447
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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