DOP1B protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

DOP1B

DOP1 leucine zipper like protein B. (2291 aa)

Predicted Functional Partners:

ENSCAPP00000017751

0.910

ENSCAPP00000000013

0.905

ENSCAPP00000001068

0.837

WDR19

0.836

ENSCAPP00000006095

0.818

TRAP1

0.809

SLC35F2

0.765

SLCO1C1

0.688

ENSCAPP00000012900

0.677

RSAD1

0.665

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DOP1B	ENSCAPP00000000013	ENSCAPP00000005891	ENSCAPP00000000013	DOP1 leucine zipper like protein B.	annotation not available	0.905
DOP1B	ENSCAPP00000001068	ENSCAPP00000005891	ENSCAPP00000001068	DOP1 leucine zipper like protein B.	annotation not available	0.837
DOP1B	ENSCAPP00000006095	ENSCAPP00000005891	ENSCAPP00000006095	DOP1 leucine zipper like protein B.	annotation not available	0.818
DOP1B	ENSCAPP00000012900	ENSCAPP00000005891	ENSCAPP00000012900	DOP1 leucine zipper like protein B.	annotation not available	0.677
DOP1B	ENSCAPP00000017751	ENSCAPP00000005891	ENSCAPP00000017751	DOP1 leucine zipper like protein B.	annotation not available	0.910
DOP1B	RSAD1	ENSCAPP00000005891	ENSCAPP00000009793	DOP1 leucine zipper like protein B.	Radical S-adenosyl methionine domain containing 1.	0.665
DOP1B	SLC35F2	ENSCAPP00000005891	ENSCAPP00000005619	DOP1 leucine zipper like protein B.	Solute carrier family 35 member F2.	0.765
DOP1B	SLCO1C1	ENSCAPP00000005891	ENSCAPP00000005349	DOP1 leucine zipper like protein B.	Solute carrier organic anion transporter family member 1C1.	0.688
DOP1B	TRAP1	ENSCAPP00000005891	ENSCAPP00000015444	DOP1 leucine zipper like protein B.	TNF receptor associated protein 1.	0.809
DOP1B	WDR19	ENSCAPP00000005891	ENSCAPP00000015804	DOP1 leucine zipper like protein B.	WD repeat domain 19.	0.836
ENSCAPP00000000013	DOP1B	ENSCAPP00000000013	ENSCAPP00000005891	annotation not available	DOP1 leucine zipper like protein B.	0.905
ENSCAPP00000000013	WDR19	ENSCAPP00000000013	ENSCAPP00000015804	annotation not available	WD repeat domain 19.	0.690
ENSCAPP00000001068	DOP1B	ENSCAPP00000001068	ENSCAPP00000005891	annotation not available	DOP1 leucine zipper like protein B.	0.837
ENSCAPP00000001068	TRAP1	ENSCAPP00000001068	ENSCAPP00000015444	annotation not available	TNF receptor associated protein 1.	0.987
ENSCAPP00000006095	DOP1B	ENSCAPP00000006095	ENSCAPP00000005891	annotation not available	DOP1 leucine zipper like protein B.	0.818
ENSCAPP00000006095	ENSCAPP00000017751	ENSCAPP00000006095	ENSCAPP00000017751	annotation not available	annotation not available	0.422
ENSCAPP00000012900	DOP1B	ENSCAPP00000012900	ENSCAPP00000005891	annotation not available	DOP1 leucine zipper like protein B.	0.677
ENSCAPP00000012900	RSAD1	ENSCAPP00000012900	ENSCAPP00000009793	annotation not available	Radical S-adenosyl methionine domain containing 1.	0.667
ENSCAPP00000017751	DOP1B	ENSCAPP00000017751	ENSCAPP00000005891	annotation not available	DOP1 leucine zipper like protein B.	0.910
ENSCAPP00000017751	ENSCAPP00000006095	ENSCAPP00000017751	ENSCAPP00000006095	annotation not available	annotation not available	0.422