TRIM55 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRIM55

Tripartite motif containing 55. (341 aa)

Predicted Functional Partners:

ICOS

0.588

ENSCAPP00000000492

0.584

ENSCAPP00000004155

0.584

ENSCAPP00000014462

0.584

UBE2L6

0.578

ENSCAPP00000015910

0.560

ENSCAPP00000003308

0.557

ENSCAPP00000015741

0.557

ENSCAPP00000016386

0.554

SQSTM1

0.536

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000492	ENSCAPP00000016386	ENSCAPP00000000492	ENSCAPP00000016386	annotation not available	annotation not available	0.465
ENSCAPP00000000492	SQSTM1	ENSCAPP00000000492	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.802
ENSCAPP00000000492	TRIM55	ENSCAPP00000000492	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.584
ENSCAPP00000000492	UBE2L6	ENSCAPP00000000492	ENSCAPP00000004102	annotation not available	Ubiquitin conjugating enzyme E2 L6.	0.961
ENSCAPP00000003308	ENSCAPP00000015910	ENSCAPP00000003308	ENSCAPP00000015910	annotation not available	annotation not available	0.692
ENSCAPP00000003308	SQSTM1	ENSCAPP00000003308	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.498
ENSCAPP00000003308	TRIM55	ENSCAPP00000003308	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.557
ENSCAPP00000004155	ENSCAPP00000016386	ENSCAPP00000004155	ENSCAPP00000016386	annotation not available	annotation not available	0.465
ENSCAPP00000004155	SQSTM1	ENSCAPP00000004155	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.802
ENSCAPP00000004155	TRIM55	ENSCAPP00000004155	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.584
ENSCAPP00000004155	UBE2L6	ENSCAPP00000004155	ENSCAPP00000004102	annotation not available	Ubiquitin conjugating enzyme E2 L6.	0.961
ENSCAPP00000014462	ENSCAPP00000016386	ENSCAPP00000014462	ENSCAPP00000016386	annotation not available	annotation not available	0.465
ENSCAPP00000014462	SQSTM1	ENSCAPP00000014462	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.802
ENSCAPP00000014462	TRIM55	ENSCAPP00000014462	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.584
ENSCAPP00000014462	UBE2L6	ENSCAPP00000014462	ENSCAPP00000004102	annotation not available	Ubiquitin conjugating enzyme E2 L6.	0.961
ENSCAPP00000015741	SQSTM1	ENSCAPP00000015741	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.498
ENSCAPP00000015741	TRIM55	ENSCAPP00000015741	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.557
ENSCAPP00000015910	ENSCAPP00000003308	ENSCAPP00000015910	ENSCAPP00000003308	annotation not available	annotation not available	0.692
ENSCAPP00000015910	SQSTM1	ENSCAPP00000015910	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.547
ENSCAPP00000015910	TRIM55	ENSCAPP00000015910	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.560