TRIM55 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

TRIM55

Tripartite motif containing 55. (341 aa)

Predicted Functional Partners:

TRIM63

0.987

ENSCAPP00000005437

0.967

SQSTM1

0.895

ENSCAPP00000000972

0.888

ENSCAPP00000008606

0.888

ENSCAPP00000007163

0.865

TRIM13

0.865

ENSCAPP00000015910

0.851

ENSCAPP00000003308

0.848

ENSCAPP00000015741

0.848

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000972	ENSCAPP00000005437	ENSCAPP00000000972	ENSCAPP00000005437	annotation not available	annotation not available	0.684
ENSCAPP00000000972	SQSTM1	ENSCAPP00000000972	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.815
ENSCAPP00000000972	TRIM55	ENSCAPP00000000972	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.888
ENSCAPP00000000972	TRIM63	ENSCAPP00000000972	ENSCAPP00000010598	annotation not available	Tripartite motif containing 63.	0.933
ENSCAPP00000003308	ENSCAPP00000005437	ENSCAPP00000003308	ENSCAPP00000005437	annotation not available	annotation not available	0.481
ENSCAPP00000003308	ENSCAPP00000015910	ENSCAPP00000003308	ENSCAPP00000015910	annotation not available	annotation not available	0.692
ENSCAPP00000003308	SQSTM1	ENSCAPP00000003308	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.603
ENSCAPP00000003308	TRIM55	ENSCAPP00000003308	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.848
ENSCAPP00000003308	TRIM63	ENSCAPP00000003308	ENSCAPP00000010598	annotation not available	Tripartite motif containing 63.	0.923
ENSCAPP00000005437	ENSCAPP00000000972	ENSCAPP00000005437	ENSCAPP00000000972	annotation not available	annotation not available	0.684
ENSCAPP00000005437	ENSCAPP00000003308	ENSCAPP00000005437	ENSCAPP00000003308	annotation not available	annotation not available	0.481
ENSCAPP00000005437	ENSCAPP00000008606	ENSCAPP00000005437	ENSCAPP00000008606	annotation not available	annotation not available	0.684
ENSCAPP00000005437	ENSCAPP00000015741	ENSCAPP00000005437	ENSCAPP00000015741	annotation not available	annotation not available	0.481
ENSCAPP00000005437	ENSCAPP00000015910	ENSCAPP00000005437	ENSCAPP00000015910	annotation not available	annotation not available	0.567
ENSCAPP00000005437	SQSTM1	ENSCAPP00000005437	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.700
ENSCAPP00000005437	TRIM55	ENSCAPP00000005437	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.967
ENSCAPP00000005437	TRIM63	ENSCAPP00000005437	ENSCAPP00000010598	annotation not available	Tripartite motif containing 63.	0.966
ENSCAPP00000007163	SQSTM1	ENSCAPP00000007163	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.830
ENSCAPP00000007163	TRIM55	ENSCAPP00000007163	ENSCAPP00000005914	annotation not available	Tripartite motif containing 55.	0.865
ENSCAPP00000007163	TRIM63	ENSCAPP00000007163	ENSCAPP00000010598	annotation not available	Tripartite motif containing 63.	0.904