Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZNF48Zinc finger protein 48. (591 aa)    
Predicted Functional Partners:
RPL3
Ribosomal protein L3.
    
   0.801
ENSCAPP00000018063
annotation not available
    
   0.801
RBM34
RNA binding motif protein 34.
    
  0.799
RRP8
Ribosomal RNA processing 8.
    
  0.752
GPR179
G protein-coupled receptor 179.
    
 
 0.713
CARD19
Caspase recruitment domain family member 19.
      
 0.683
RHBDD2
Rhomboid domain containing 2.
      
 0.660
COMMD9
COMM domain containing 9.
     
 0.646
TRIM44
Tripartite motif containing 44.
    
 0.615
ENSCAPP00000002778
annotation not available
    
 
 0.599
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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