MTM1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MTM1

Myotubularin 1. (593 aa)

Predicted Functional Partners:

MTMR2

0.997

ENSCAPP00000005239

0.989

MTMR14

0.984

PIK3C2B

0.974

ENSCAPP00000002610

0.967

MTMR12

0.959

ENSCAPP00000017767

0.954

PIK3C3

0.952

ENSCAPP00000008469

0.948

MTMR7

0.944

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002610	ENSCAPP00000005239	ENSCAPP00000002610	ENSCAPP00000005239	annotation not available	annotation not available	0.967
ENSCAPP00000002610	ENSCAPP00000008469	ENSCAPP00000002610	ENSCAPP00000008469	annotation not available	annotation not available	0.621
ENSCAPP00000002610	ENSCAPP00000017767	ENSCAPP00000002610	ENSCAPP00000017767	annotation not available	annotation not available	0.905
ENSCAPP00000002610	MTM1	ENSCAPP00000002610	ENSCAPP00000005948	annotation not available	Myotubularin 1.	0.967
ENSCAPP00000002610	MTMR12	ENSCAPP00000002610	ENSCAPP00000008345	annotation not available	Myotubularin related protein 12.	0.461
ENSCAPP00000002610	MTMR14	ENSCAPP00000002610	ENSCAPP00000018417	annotation not available	Myotubularin related protein 14.	0.917
ENSCAPP00000002610	MTMR2	ENSCAPP00000002610	ENSCAPP00000001064	annotation not available	Myotubularin related protein 2.	0.967
ENSCAPP00000002610	MTMR7	ENSCAPP00000002610	ENSCAPP00000003561	annotation not available	Myotubularin related protein 7.	0.921
ENSCAPP00000002610	PIK3C2B	ENSCAPP00000002610	ENSCAPP00000016778	annotation not available	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta.	0.954
ENSCAPP00000002610	PIK3C3	ENSCAPP00000002610	ENSCAPP00000017120	annotation not available	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.948
ENSCAPP00000005239	ENSCAPP00000002610	ENSCAPP00000005239	ENSCAPP00000002610	annotation not available	annotation not available	0.967
ENSCAPP00000005239	ENSCAPP00000008469	ENSCAPP00000005239	ENSCAPP00000008469	annotation not available	annotation not available	0.955
ENSCAPP00000005239	ENSCAPP00000017767	ENSCAPP00000005239	ENSCAPP00000017767	annotation not available	annotation not available	0.850
ENSCAPP00000005239	MTM1	ENSCAPP00000005239	ENSCAPP00000005948	annotation not available	Myotubularin 1.	0.989
ENSCAPP00000005239	MTMR12	ENSCAPP00000005239	ENSCAPP00000008345	annotation not available	Myotubularin related protein 12.	0.888
ENSCAPP00000005239	MTMR14	ENSCAPP00000005239	ENSCAPP00000018417	annotation not available	Myotubularin related protein 14.	0.961
ENSCAPP00000005239	MTMR2	ENSCAPP00000005239	ENSCAPP00000001064	annotation not available	Myotubularin related protein 2.	0.993
ENSCAPP00000005239	MTMR7	ENSCAPP00000005239	ENSCAPP00000003561	annotation not available	Myotubularin related protein 7.	0.944
ENSCAPP00000005239	PIK3C2B	ENSCAPP00000005239	ENSCAPP00000016778	annotation not available	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta.	0.967
ENSCAPP00000005239	PIK3C3	ENSCAPP00000005239	ENSCAPP00000017120	annotation not available	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.952