CPNE5 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

CPNE5

Copine 5. (573 aa)

Predicted Functional Partners:

RNASEH2B

0.714

RNASEH2A

0.667

UBA2

0.633

LGI4

0.551

ELAVL3

0.541

CPNE6

0.536

SEMA4F

0.533

GPSM1

0.533

PRAG1

0.528

CPNE7

0.527

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPNE5	CPNE6	ENSCAPP00000005956	ENSCAPP00000013884	Copine 5.	Copine 6.	0.536
CPNE5	CPNE7	ENSCAPP00000005956	ENSCAPP00000010655	Copine 5.	Copine 7.	0.527
CPNE5	ELAVL3	ENSCAPP00000005956	ENSCAPP00000018141	Copine 5.	ELAV like RNA binding protein 3.	0.541
CPNE5	GPSM1	ENSCAPP00000005956	ENSCAPP00000016431	Copine 5.	G protein signaling modulator 1.	0.533
CPNE5	LGI4	ENSCAPP00000005956	ENSCAPP00000015105	Copine 5.	Leucine rich repeat LGI family member 4.	0.551
CPNE5	PRAG1	ENSCAPP00000005956	ENSCAPP00000013816	Copine 5.	PEAK1 related, kinase-activating pseudokinase 1.	0.528
CPNE5	RNASEH2A	ENSCAPP00000005956	ENSCAPP00000001671	Copine 5.	Ribonuclease H2 subunit A.	0.667
CPNE5	RNASEH2B	ENSCAPP00000005956	ENSCAPP00000008241	Copine 5.	Ribonuclease H2 subunit B.	0.714
CPNE5	SEMA4F	ENSCAPP00000005956	ENSCAPP00000013608	Copine 5.	Ssemaphorin 4F.	0.533
CPNE5	UBA2	ENSCAPP00000005956	ENSCAPP00000017650	Copine 5.	Ubiquitin like modifier activating enzyme 2.	0.633
CPNE6	CPNE5	ENSCAPP00000013884	ENSCAPP00000005956	Copine 6.	Copine 5.	0.536
CPNE6	CPNE7	ENSCAPP00000013884	ENSCAPP00000010655	Copine 6.	Copine 7.	0.950
CPNE6	RNASEH2A	ENSCAPP00000013884	ENSCAPP00000001671	Copine 6.	Ribonuclease H2 subunit A.	0.667
CPNE6	RNASEH2B	ENSCAPP00000013884	ENSCAPP00000008241	Copine 6.	Ribonuclease H2 subunit B.	0.714
CPNE7	CPNE5	ENSCAPP00000010655	ENSCAPP00000005956	Copine 7.	Copine 5.	0.527
CPNE7	CPNE6	ENSCAPP00000010655	ENSCAPP00000013884	Copine 7.	Copine 6.	0.950
CPNE7	RNASEH2A	ENSCAPP00000010655	ENSCAPP00000001671	Copine 7.	Ribonuclease H2 subunit A.	0.667
CPNE7	RNASEH2B	ENSCAPP00000010655	ENSCAPP00000008241	Copine 7.	Ribonuclease H2 subunit B.	0.714
ELAVL3	CPNE5	ENSCAPP00000018141	ENSCAPP00000005956	ELAV like RNA binding protein 3.	Copine 5.	0.541
ELAVL3	GPSM1	ENSCAPP00000018141	ENSCAPP00000016431	ELAV like RNA binding protein 3.	G protein signaling modulator 1.	0.532