Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CHGAChromogranin A. (394 aa)    
Predicted Functional Partners:
CHGB
Chromogranin B.
   
 
 0.999
PLEKHB1
Pleckstrin homology domain containing B1.
   
    0.995
CD79A
CD79a molecule.
      
 0.869
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
      
 0.867
ENSCAPP00000010612
annotation not available
   
 
 0.859
OLFM4
Olfactomedin 4.
      
 0.819
SCG3
Secretogranin III.
   
  
 0.812
ENO2
Enolase 2.
      
 0.782
TPH1
Tryptophan hydroxylase 1.
      
 0.758
GHRL
Ghrelin and obestatin prepropeptide.
      
 0.756
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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