NAV1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV1

Neuron navigator 1. (1600 aa)

Predicted Functional Partners:

CCNB2

0.911

ENSCAPP00000009621

0.836

ENSCAPP00000012568

0.836

MYSM1

0.787

SCN1A

0.758

CPN1

0.676

GPR37L1

0.666

WDR41

0.651

HTR6

0.626

ENSCAPP00000010381

0.599

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNB2	ENSCAPP00000009621	ENSCAPP00000008806	ENSCAPP00000009621	Cyclin B2.	annotation not available	0.471
CCNB2	ENSCAPP00000012568	ENSCAPP00000008806	ENSCAPP00000012568	Cyclin B2.	annotation not available	0.471
CCNB2	NAV1	ENSCAPP00000008806	ENSCAPP00000005961	Cyclin B2.	Neuron navigator 1.	0.911
CPN1	NAV1	ENSCAPP00000002958	ENSCAPP00000005961	Carboxypeptidase N subunit 1.	Neuron navigator 1.	0.676
ENSCAPP00000009621	CCNB2	ENSCAPP00000009621	ENSCAPP00000008806	annotation not available	Cyclin B2.	0.471
ENSCAPP00000009621	NAV1	ENSCAPP00000009621	ENSCAPP00000005961	annotation not available	Neuron navigator 1.	0.836
ENSCAPP00000009621	WDR41	ENSCAPP00000009621	ENSCAPP00000011912	annotation not available	WD repeat domain 41.	0.433
ENSCAPP00000010381	MYSM1	ENSCAPP00000010381	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.416
ENSCAPP00000010381	NAV1	ENSCAPP00000010381	ENSCAPP00000005961	annotation not available	Neuron navigator 1.	0.599
ENSCAPP00000012568	CCNB2	ENSCAPP00000012568	ENSCAPP00000008806	annotation not available	Cyclin B2.	0.471
ENSCAPP00000012568	NAV1	ENSCAPP00000012568	ENSCAPP00000005961	annotation not available	Neuron navigator 1.	0.836
ENSCAPP00000012568	WDR41	ENSCAPP00000012568	ENSCAPP00000011912	annotation not available	WD repeat domain 41.	0.433
GPR37L1	NAV1	ENSCAPP00000018442	ENSCAPP00000005961	G protein-coupled receptor 37 like 1.	Neuron navigator 1.	0.666
HTR6	NAV1	ENSCAPP00000015842	ENSCAPP00000005961	5-hydroxytryptamine receptor 6.	Neuron navigator 1.	0.626
MYSM1	ENSCAPP00000010381	ENSCAPP00000004064	ENSCAPP00000010381	Myb like, SWIRM and MPN domains 1.	annotation not available	0.416
MYSM1	NAV1	ENSCAPP00000004064	ENSCAPP00000005961	Myb like, SWIRM and MPN domains 1.	Neuron navigator 1.	0.787
NAV1	CCNB2	ENSCAPP00000005961	ENSCAPP00000008806	Neuron navigator 1.	Cyclin B2.	0.911
NAV1	CPN1	ENSCAPP00000005961	ENSCAPP00000002958	Neuron navigator 1.	Carboxypeptidase N subunit 1.	0.676
NAV1	ENSCAPP00000009621	ENSCAPP00000005961	ENSCAPP00000009621	Neuron navigator 1.	annotation not available	0.836
NAV1	ENSCAPP00000010381	ENSCAPP00000005961	ENSCAPP00000010381	Neuron navigator 1.	annotation not available	0.599