CPNE3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPNE3

Copine 3. (432 aa)

Predicted Functional Partners:

RNASEH2B

0.714

RNASEH2A

0.667

RBM12B

0.667

SLC7A13

0.619

TOP1

0.609

UBE2O

0.591

ENSCAPP00000011280

0.567

ENSCAPP00000016993

0.567

ENSCAPP00000008890

0.561

ENSCAPP00000015688

0.561

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPNE3	ENSCAPP00000008890	ENSCAPP00000005965	ENSCAPP00000008890	Copine 3.	annotation not available	0.561
CPNE3	ENSCAPP00000011280	ENSCAPP00000005965	ENSCAPP00000011280	Copine 3.	annotation not available	0.567
CPNE3	ENSCAPP00000015688	ENSCAPP00000005965	ENSCAPP00000015688	Copine 3.	annotation not available	0.561
CPNE3	ENSCAPP00000016993	ENSCAPP00000005965	ENSCAPP00000016993	Copine 3.	annotation not available	0.567
CPNE3	RBM12B	ENSCAPP00000005965	ENSCAPP00000001699	Copine 3.	RNA binding motif protein 12B.	0.667
CPNE3	RNASEH2A	ENSCAPP00000005965	ENSCAPP00000001671	Copine 3.	Ribonuclease H2 subunit A.	0.667
CPNE3	RNASEH2B	ENSCAPP00000005965	ENSCAPP00000008241	Copine 3.	Ribonuclease H2 subunit B.	0.714
CPNE3	SLC7A13	ENSCAPP00000005965	ENSCAPP00000007321	Copine 3.	Solute carrier family 7 member 13.	0.619
CPNE3	TOP1	ENSCAPP00000005965	ENSCAPP00000015392	Copine 3.	DNA topoisomerase I.	0.609
CPNE3	UBE2O	ENSCAPP00000005965	ENSCAPP00000017586	Copine 3.	Ubiquitin conjugating enzyme E2 O.	0.591
ENSCAPP00000008890	CPNE3	ENSCAPP00000008890	ENSCAPP00000005965	annotation not available	Copine 3.	0.561
ENSCAPP00000008890	ENSCAPP00000015688	ENSCAPP00000008890	ENSCAPP00000015688	annotation not available	annotation not available	0.934
ENSCAPP00000008890	RNASEH2A	ENSCAPP00000008890	ENSCAPP00000001671	annotation not available	Ribonuclease H2 subunit A.	0.667
ENSCAPP00000008890	RNASEH2B	ENSCAPP00000008890	ENSCAPP00000008241	annotation not available	Ribonuclease H2 subunit B.	0.714
ENSCAPP00000011280	CPNE3	ENSCAPP00000011280	ENSCAPP00000005965	annotation not available	Copine 3.	0.567
ENSCAPP00000011280	SLC7A13	ENSCAPP00000011280	ENSCAPP00000007321	annotation not available	Solute carrier family 7 member 13.	0.446
ENSCAPP00000015688	CPNE3	ENSCAPP00000015688	ENSCAPP00000005965	annotation not available	Copine 3.	0.561
ENSCAPP00000015688	ENSCAPP00000008890	ENSCAPP00000015688	ENSCAPP00000008890	annotation not available	annotation not available	0.934
ENSCAPP00000015688	RNASEH2A	ENSCAPP00000015688	ENSCAPP00000001671	annotation not available	Ribonuclease H2 subunit A.	0.667
ENSCAPP00000015688	RNASEH2B	ENSCAPP00000015688	ENSCAPP00000008241	annotation not available	Ribonuclease H2 subunit B.	0.714