Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRT23Keratin 23. (422 aa)    
Predicted Functional Partners:
KRT80
Keratin 80.
     
 0.646
MREG
Melanoregulin.
      
 0.625
GNG13
G protein subunit gamma 13.
   
  
 0.609
SEPTIN8
Septin 8.
      
 0.569
DEPDC7
DEP domain containing 7.
      
 0.569
RASL10B
RAS like family 10 member B.
      
 0.539
PRSS53
Serine protease 53.
      
 0.525
PPL
Periplakin.
      
 0.511
ENSCAPP00000000778
annotation not available
    
  0.492
ENSCAPP00000000818
annotation not available
    
  0.492
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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