Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCGF1Polycomb group ring finger 1. (161 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
   
 0.999
PCGF3
Polycomb group ring finger 3.
    
 0.998
RYBP
RING1 and YY1 binding protein.
    
 0.998
CBX7
Chromobox 7.
    
 0.998
BCOR
BCL6 corepressor.
    
 0.997
ENSCAPP00000001276
annotation not available
    
 0.997
PCGF5
Polycomb group ring finger 5.
    
 0.997
CBX2
Chromobox 2.
    
 0.997
ENSCAPP00000011556
annotation not available
    
 0.996
E2F6
E2F transcription factor 6.
    
 0.995
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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