ENSCAPP00000006005 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000006005

annotation not available (363 aa)

Predicted Functional Partners:

GNPAT

0.999

ENSCAPP00000009606

0.976

PEX5

0.966

GORASP1

0.958

ENSCAPP00000004940

0.923

ENSCAPP00000006987

0.923

ACBD5

0.904

PEX14

0.893

ENSCAPP00000010740

0.889

PEX12

0.863

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACBD5	ENSCAPP00000004940	ENSCAPP00000008795	ENSCAPP00000004940	acyl-CoA binding domain containing 5.	annotation not available	0.690
ACBD5	ENSCAPP00000006005	ENSCAPP00000008795	ENSCAPP00000006005	acyl-CoA binding domain containing 5.	annotation not available	0.904
ACBD5	ENSCAPP00000006987	ENSCAPP00000008795	ENSCAPP00000006987	acyl-CoA binding domain containing 5.	annotation not available	0.690
ACBD5	ENSCAPP00000010740	ENSCAPP00000008795	ENSCAPP00000010740	acyl-CoA binding domain containing 5.	annotation not available	0.583
ACBD5	GNPAT	ENSCAPP00000008795	ENSCAPP00000012195	acyl-CoA binding domain containing 5.	Glyceronephosphate O-acyltransferase.	0.667
ACBD5	PEX12	ENSCAPP00000008795	ENSCAPP00000009748	acyl-CoA binding domain containing 5.	Peroxisomal biogenesis factor 12.	0.706
ACBD5	PEX14	ENSCAPP00000008795	ENSCAPP00000008933	acyl-CoA binding domain containing 5.	Peroxisomal biogenesis factor 14.	0.752
ACBD5	PEX5	ENSCAPP00000008795	ENSCAPP00000000110	acyl-CoA binding domain containing 5.	Peroxisomal biogenesis factor 5.	0.659
ENSCAPP00000004940	ACBD5	ENSCAPP00000004940	ENSCAPP00000008795	annotation not available	acyl-CoA binding domain containing 5.	0.690
ENSCAPP00000004940	ENSCAPP00000006005	ENSCAPP00000004940	ENSCAPP00000006005	annotation not available	annotation not available	0.923
ENSCAPP00000004940	ENSCAPP00000006987	ENSCAPP00000004940	ENSCAPP00000006987	annotation not available	annotation not available	0.970
ENSCAPP00000004940	ENSCAPP00000010740	ENSCAPP00000004940	ENSCAPP00000010740	annotation not available	annotation not available	0.965
ENSCAPP00000004940	GNPAT	ENSCAPP00000004940	ENSCAPP00000012195	annotation not available	Glyceronephosphate O-acyltransferase.	0.742
ENSCAPP00000004940	PEX12	ENSCAPP00000004940	ENSCAPP00000009748	annotation not available	Peroxisomal biogenesis factor 12.	0.769
ENSCAPP00000004940	PEX14	ENSCAPP00000004940	ENSCAPP00000008933	annotation not available	Peroxisomal biogenesis factor 14.	0.805
ENSCAPP00000004940	PEX5	ENSCAPP00000004940	ENSCAPP00000000110	annotation not available	Peroxisomal biogenesis factor 5.	0.966
ENSCAPP00000006005	ACBD5	ENSCAPP00000006005	ENSCAPP00000008795	annotation not available	acyl-CoA binding domain containing 5.	0.904
ENSCAPP00000006005	ENSCAPP00000004940	ENSCAPP00000006005	ENSCAPP00000004940	annotation not available	annotation not available	0.923
ENSCAPP00000006005	ENSCAPP00000006987	ENSCAPP00000006005	ENSCAPP00000006987	annotation not available	annotation not available	0.923
ENSCAPP00000006005	ENSCAPP00000009606	ENSCAPP00000006005	ENSCAPP00000009606	annotation not available	annotation not available	0.976