STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POLBDNA polymerase beta. (419 aa)    
Predicted Functional Partners:
XRCC1
X-ray repair cross complementing 1.
   
 0.983
PNKP
Polynucleotide kinase 3'-phosphatase.
    
 0.940
LIG3
DNA ligase 3.
  
 0.910
APEX1
Apurinic/apyrimidinic endodeoxyribonuclease 1.
    
 0.910
FEN1
Flap structure-specific endonuclease 1.
   
 0.892
ENSCAPP00000000297
annotation not available
   
 0.878
ENSCAPP00000009733
annotation not available
    
 0.869
ENSCAPP00000012367
annotation not available
    
 0.869
ENSCAPP00000004908
annotation not available
  
 0.860
ENSCAPP00000008708
annotation not available
  
 0.860
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.