DAZAP1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DAZAP1

DAZ associated protein 1. (396 aa)

Predicted Functional Partners:

MSI1

0.938

ENSCAPP00000003104

0.862

ENSCAPP00000006600

0.862

SAMD8

0.854

CSTF3

0.851

SRSF5

0.802

WWOX

0.785

ZC3H14

0.758

ZNF804A

0.747

SSX2IP

0.745

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSTF3	DAZAP1	ENSCAPP00000009510	ENSCAPP00000006068	Cleavage stimulation factor subunit 3.	DAZ associated protein 1.	0.851
CSTF3	ENSCAPP00000003104	ENSCAPP00000009510	ENSCAPP00000003104	Cleavage stimulation factor subunit 3.	annotation not available	0.851
CSTF3	ENSCAPP00000006600	ENSCAPP00000009510	ENSCAPP00000006600	Cleavage stimulation factor subunit 3.	annotation not available	0.851
CSTF3	MSI1	ENSCAPP00000009510	ENSCAPP00000001873	Cleavage stimulation factor subunit 3.	Musashi RNA binding protein 1.	0.851
CSTF3	SRSF5	ENSCAPP00000009510	ENSCAPP00000006718	Cleavage stimulation factor subunit 3.	Serine and arginine rich splicing factor 5.	0.741
DAZAP1	CSTF3	ENSCAPP00000006068	ENSCAPP00000009510	DAZ associated protein 1.	Cleavage stimulation factor subunit 3.	0.851
DAZAP1	ENSCAPP00000003104	ENSCAPP00000006068	ENSCAPP00000003104	DAZ associated protein 1.	annotation not available	0.862
DAZAP1	ENSCAPP00000006600	ENSCAPP00000006068	ENSCAPP00000006600	DAZ associated protein 1.	annotation not available	0.862
DAZAP1	MSI1	ENSCAPP00000006068	ENSCAPP00000001873	DAZ associated protein 1.	Musashi RNA binding protein 1.	0.938
DAZAP1	SAMD8	ENSCAPP00000006068	ENSCAPP00000010454	DAZ associated protein 1.	Sterile alpha motif domain containing 8.	0.854
DAZAP1	SRSF5	ENSCAPP00000006068	ENSCAPP00000006718	DAZ associated protein 1.	Serine and arginine rich splicing factor 5.	0.802
DAZAP1	SSX2IP	ENSCAPP00000006068	ENSCAPP00000007543	DAZ associated protein 1.	SSX family member 2 interacting protein.	0.745
DAZAP1	WWOX	ENSCAPP00000006068	ENSCAPP00000007818	DAZ associated protein 1.	WW domain containing oxidoreductase.	0.785
DAZAP1	ZC3H14	ENSCAPP00000006068	ENSCAPP00000008855	DAZ associated protein 1.	Zinc finger CCCH-type containing 14.	0.758
DAZAP1	ZNF804A	ENSCAPP00000006068	ENSCAPP00000016586	DAZ associated protein 1.	Zinc finger protein 804A.	0.747
ENSCAPP00000003104	CSTF3	ENSCAPP00000003104	ENSCAPP00000009510	annotation not available	Cleavage stimulation factor subunit 3.	0.851
ENSCAPP00000003104	DAZAP1	ENSCAPP00000003104	ENSCAPP00000006068	annotation not available	DAZ associated protein 1.	0.862
ENSCAPP00000003104	ENSCAPP00000006600	ENSCAPP00000003104	ENSCAPP00000006600	annotation not available	annotation not available	0.900
ENSCAPP00000003104	MSI1	ENSCAPP00000003104	ENSCAPP00000001873	annotation not available	Musashi RNA binding protein 1.	0.840
ENSCAPP00000003104	SRSF5	ENSCAPP00000003104	ENSCAPP00000006718	annotation not available	Serine and arginine rich splicing factor 5.	0.491