Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PKP1Plakophilin 1. (650 aa)    
Predicted Functional Partners:
DSG1
Desmoglein 1.
   
 0.998
ENSCAPP00000013192
annotation not available
   
 0.997
DSG3
Desmoglein 3.
   
 0.986
DSG2
Desmoglein 2.
   
 0.985
JUP
Junction plakoglobin.
   
 0.978
PLEC
Plectin.
   
 0.968
DSC2
Desmocollin 2.
   
 0.952
DSC1
Desmocollin 1.
   
 0.951
DSG4
Desmoglein 4.
   
 0.949
DSC3
Desmocollin 3.
   
 0.943
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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