Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB34RAB34, member RAS oncogene family. (241 aa)    
Predicted Functional Partners:
VPS53
VPS53 subunit of GARP complex.
    
 0.970
RAB30
RAB30, member RAS oncogene family.
     
  0.920
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
   
 0.915
ARL1
ADP ribosylation factor like GTPase 1.
   
 0.909
COG6
Component of oligomeric golgi complex 6.
   
 0.903
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.886
ENSCAPP00000017221
annotation not available
    
 0.885
PNKP
Polynucleotide kinase 3'-phosphatase.
      
 0.882
VPS52
VPS52 subunit of GARP complex.
    
 0.867
RGP1
RGP1 homolog, RAB6A GEF complex partner 1.
    
 0.839
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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