HDGFL3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

Experiments

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[Homology]

Score

HDGFL3

HDGF like 3. (149 aa)

Predicted Functional Partners:

MIGA1

0.826

CDK12

0.683

ENSCAPP00000018683

0.683

ANTXR2

0.671

HMCN2

0.657

SNN

0.657

CCNT2

0.607

CCNQ

0.607

CCNK

0.607

CLCN1

0.591

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANTXR2	HDGFL3	ENSCAPP00000004628	ENSCAPP00000006096	ANTXR cell adhesion molecule 2.	HDGF like 3.	0.671
CCNK	CCNT2	ENSCAPP00000007781	ENSCAPP00000003657	Cyclin K.	Cyclin T2.	0.947
CCNK	CDK12	ENSCAPP00000007781	ENSCAPP00000000217	Cyclin K.	Cyclin dependent kinase 12.	0.987
CCNK	ENSCAPP00000018683	ENSCAPP00000007781	ENSCAPP00000018683	Cyclin K.	annotation not available	0.987
CCNK	HDGFL3	ENSCAPP00000007781	ENSCAPP00000006096	Cyclin K.	HDGF like 3.	0.607
CCNQ	CDK12	ENSCAPP00000006711	ENSCAPP00000000217	Cyclin Q.	Cyclin dependent kinase 12.	0.826
CCNQ	ENSCAPP00000018683	ENSCAPP00000006711	ENSCAPP00000018683	Cyclin Q.	annotation not available	0.826
CCNQ	HDGFL3	ENSCAPP00000006711	ENSCAPP00000006096	Cyclin Q.	HDGF like 3.	0.607
CCNT2	CCNK	ENSCAPP00000003657	ENSCAPP00000007781	Cyclin T2.	Cyclin K.	0.947
CCNT2	CDK12	ENSCAPP00000003657	ENSCAPP00000000217	Cyclin T2.	Cyclin dependent kinase 12.	0.956
CCNT2	ENSCAPP00000018683	ENSCAPP00000003657	ENSCAPP00000018683	Cyclin T2.	annotation not available	0.956
CCNT2	HDGFL3	ENSCAPP00000003657	ENSCAPP00000006096	Cyclin T2.	HDGF like 3.	0.607
CDK12	CCNK	ENSCAPP00000000217	ENSCAPP00000007781	Cyclin dependent kinase 12.	Cyclin K.	0.987
CDK12	CCNQ	ENSCAPP00000000217	ENSCAPP00000006711	Cyclin dependent kinase 12.	Cyclin Q.	0.826
CDK12	CCNT2	ENSCAPP00000000217	ENSCAPP00000003657	Cyclin dependent kinase 12.	Cyclin T2.	0.956
CDK12	ENSCAPP00000018683	ENSCAPP00000000217	ENSCAPP00000018683	Cyclin dependent kinase 12.	annotation not available	0.754
CDK12	HDGFL3	ENSCAPP00000000217	ENSCAPP00000006096	Cyclin dependent kinase 12.	HDGF like 3.	0.683
CLCN1	HDGFL3	ENSCAPP00000014326	ENSCAPP00000006096	Chloride voltage-gated channel 1.	HDGF like 3.	0.591
CLCN1	MIGA1	ENSCAPP00000014326	ENSCAPP00000018303	Chloride voltage-gated channel 1.	Mitoguardin 1.	0.571
ENSCAPP00000018683	CCNK	ENSCAPP00000018683	ENSCAPP00000007781	annotation not available	Cyclin K.	0.987