Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
OTUD6BOTU deubiquitinase 6B. (257 aa)    
Predicted Functional Partners:
EIF4E
Eukaryotic translation initiation factor 4E.
   
  0.885
EIF4E3
Eukaryotic translation initiation factor 4E family member 3.
   
 0.884
EIF4E1B
Eukaryotic translation initiation factor 4E family member 1B.
   
  0.879
EIF4G3
Eukaryotic translation initiation factor 4 gamma 3.
   
  0.876
EIF4G2
Eukaryotic translation initiation factor 4 gamma 2.
   
  0.876
EIF4E2
Eukaryotic translation initiation factor 4E family member 2.
     
  0.867
OTUB1
OTU deubiquitinase, ubiquitin aldehyde binding 1.
    
 
 0.834
ENSCAPP00000017855
annotation not available
   
 
  0.809
NCBP1
Nuclear cap binding protein subunit 1.
   
 
  0.794
ENSCAPP00000007298
annotation not available
   
  0.775
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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