Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CLPTM1CLPTM1 regulator of GABA type A receptor forward trafficking. (642 aa)    
Predicted Functional Partners:
DDX11
DEAD/H-box helicase 11.
    
 
 0.832
ENSCAPP00000015092
annotation not available
    
 
 0.832
MAD2L1
Mitotic arrest deficient 2 like 1.
    
   0.831
MYCBPAP
MYCBP associated protein.
    
 0.745
ENSCAPP00000003461
annotation not available
     
 0.743
GPI
Glucose-6-phosphate isomerase.
     
 0.742
DBH
Dopamine beta-hydroxylase.
      
 0.688
HAO1
Hydroxyacid oxidase 1.
     
 0.687
SMC3
Structural maintenance of chromosomes 3.
    
   0.685
PDHB
Pyruvate dehydrogenase E1 beta subunit.
     
 0.682
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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