STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUPT5HSPT5 homolog, DSIF elongation factor subunit. (1040 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.999
RNGTT
RNA guanylyltransferase and 5'-phosphatase.
    
 0.998
SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor.
   
 0.998
ELOF1
Elongation factor 1 homolog.
    
 0.997
ENSCAPP00000001157
annotation not available
   
0.997
SSRP1
Structure specific recognition protein 1.
   
 0.997
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 0.997
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.997
POLR2B
RNA polymerase II subunit B.
   
 0.997
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.997
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.