Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCP1Lymphocyte cytosolic protein 1. (611 aa)    
Predicted Functional Partners:
ENSCAPP00000013943
annotation not available
    
   0.959
PLS1
Plastin 1.
   
   0.941
CTSF
Cathepsin F.
      
 0.919
CAPZB
Capping actin protein of muscle Z-line subunit beta.
    
 0.918
ACTG2
Actin gamma 2, smooth muscle.
   
 
 0.904
CXADR
CXADR Ig-like cell adhesion molecule.
   
  
 0.890
ENSCAPP00000011080
annotation not available
   
 
 0.870
SERPINB13
Serpin family B member 13.
    
 
 0.837
LAPTM5
Lysosomal protein transmembrane 5.
   
    0.822
C16orf72
Chromosome 16 open reading frame 72.
    
   0.821
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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